STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1564Conserved hypothetical protein, possible methyltransferase; Pfam match to PF08241.3 Methyltransf_11. (225 aa)    
Predicted Functional Partners:
Cla_0255
Conserved hypothetical integral membrane protein.
  
     0.709
Cla_0114
Conserved hypothetical protein.
  
    0.642
hemN3
Pfam match to PF04055.12 Radical_SAM.
     
 0.599
Cla_1303
Conserved hypothetical protein, methyltransferase type 12 domain; Pfam match to PF08242.3 Methyltransf_12.
  
     0.598
Cla_1243
Glycosyltransferase; Pfam match to PF05704.3 Caps_synth.
 
     0.580
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
  
    0.578
flgL
Flagellin family protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
 
   0.494
tonB2
TonB domain protein; Pfam match to PF03544.5 TonB.
  
    0.493
mnmC
Conserved hypothetical protein (DUF752 domain protein); Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
  
 
 
 0.473
Cla_0972
Conserved hypothetical protein, ankyrin repeat domain protein; Pfam match to PF00023.21 Ank.
  
 
   0.472
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.