Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFO89082.1 | SFO89110.1 | SAMN05421839_10165 | SAMN05421839_10166 | Competence protein ComEC. | dCMP deaminase. | 0.831 |
SFO89082.1 | SFO89137.1 | SAMN05421839_10165 | SAMN05421839_10167 | Competence protein ComEC. | Competence protein ComEA. | 0.868 |
SFO89110.1 | SFO89082.1 | SAMN05421839_10166 | SAMN05421839_10165 | dCMP deaminase. | Competence protein ComEC. | 0.831 |
SFO89110.1 | SFO89137.1 | SAMN05421839_10166 | SAMN05421839_10167 | dCMP deaminase. | Competence protein ComEA. | 0.805 |
SFO89110.1 | SFP64214.1 | SAMN05421839_10166 | SAMN05421839_1378 | dCMP deaminase. | Deoxyguanosine kinase. | 0.612 |
SFO89110.1 | SFP64238.1 | SAMN05421839_10166 | SAMN05421839_1379 | dCMP deaminase. | Deoxyadenosine/deoxycytidine kinase. | 0.654 |
SFO89110.1 | SFP67088.1 | SAMN05421839_10166 | SAMN05421839_14018 | dCMP deaminase. | Pyrimidine-nucleoside phosphorylase. | 0.639 |
SFO89110.1 | SFP74629.1 | SAMN05421839_10166 | SAMN05421839_15215 | dCMP deaminase. | Xaa-Pro aminopeptidase. | 0.609 |
SFO89110.1 | tdk | SAMN05421839_10166 | SAMN05421839_10411 | dCMP deaminase. | Thymidine kinase. | 0.696 |
SFO89110.1 | thyA | SAMN05421839_10166 | SAMN05421839_11128 | dCMP deaminase. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.719 |
SFO89110.1 | tmk | SAMN05421839_10166 | SAMN05421839_1457 | dCMP deaminase. | dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.917 |
SFO89110.1 | udk | SAMN05421839_10166 | SAMN05421839_10179 | dCMP deaminase. | Uridine kinase. | 0.677 |
SFO89137.1 | SFO89082.1 | SAMN05421839_10167 | SAMN05421839_10165 | Competence protein ComEA. | Competence protein ComEC. | 0.868 |
SFO89137.1 | SFO89110.1 | SAMN05421839_10167 | SAMN05421839_10166 | Competence protein ComEA. | dCMP deaminase. | 0.805 |
SFP64214.1 | SFO89110.1 | SAMN05421839_1378 | SAMN05421839_10166 | Deoxyguanosine kinase. | dCMP deaminase. | 0.612 |
SFP64214.1 | SFP64238.1 | SAMN05421839_1378 | SAMN05421839_1379 | Deoxyguanosine kinase. | Deoxyadenosine/deoxycytidine kinase. | 0.859 |
SFP64214.1 | SFP67088.1 | SAMN05421839_1378 | SAMN05421839_14018 | Deoxyguanosine kinase. | Pyrimidine-nucleoside phosphorylase. | 0.513 |
SFP64214.1 | tdk | SAMN05421839_1378 | SAMN05421839_10411 | Deoxyguanosine kinase. | Thymidine kinase. | 0.669 |
SFP64214.1 | thyA | SAMN05421839_1378 | SAMN05421839_11128 | Deoxyguanosine kinase. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.672 |
SFP64214.1 | tmk | SAMN05421839_1378 | SAMN05421839_1457 | Deoxyguanosine kinase. | dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.638 |
page 1 of 3