STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO95302.1Putative phage-type endonuclease. (494 aa)    
Predicted Functional Partners:
SFO95277.1
AAA domain-containing protein.
 
     0.949
SFO95330.1
Helicase conserved C-terminal domain-containing protein.
 
     0.935
SFO95057.1
Putative DNA primase/helicase.
 
     0.805
SFO95358.1
Holliday junction resolvase (hjc).
       0.800
SFO95380.1
Hypothetical protein.
       0.773
SFO95226.1
Hypothetical protein.
       0.607
SFO95251.1
Hypothetical protein.
       0.574
SFO95405.1
Protein of unknown function.
       0.568
SFO95583.1
Helix-turn-helix.
 
     0.543
SFO95434.1
Hypothetical protein.
       0.531
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.