STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP02434.1Predicted dehydrogenase. (388 aa)    
Predicted Functional Partners:
SFP02391.1
Sugar phosphate isomerase/epimerase.
 
 
  0.971
SFP02370.1
Predicted dehydrogenase.
 
     0.907
SFP02412.1
Predicted dehydrogenase.
 
    
0.819
SFP72143.1
Sugar phosphate isomerase/epimerase.
  
 
  0.813
SFP02452.1
AraC-type DNA-binding protein.
  
    0.777
SFP01657.1
Sugar phosphate isomerase/epimerase.
  
 
  0.697
SFP72071.1
Sugar phosphate isomerase/epimerase.
 
 
  0.685
SFP47943.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
   
 
 0.676
SFP01457.1
Sugar phosphate isomerase/epimerase.
  
 
  0.607
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.570
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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