STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP04856.1Fucose 4-O-acetylase. (319 aa)    
Predicted Functional Partners:
SFP17725.1
YkyB-like protein.
  
     0.647
SFP34245.1
Hypothetical protein.
  
     0.618
SFP34818.1
Gas vesicle protein.
  
     0.540
SFO91171.1
Hypothetical protein.
  
     0.504
SFP25431.1
Hypothetical protein.
  
     0.500
SFP45023.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
  
 0.490
SFP76027.1
Competence protein ComK.
  
     0.482
SFP75957.1
Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain.
  
     0.451
SFO97820.1
Flagellar FliL protein.
  
     0.443
SFP45085.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
  
 0.439
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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