STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP05006.1Hypothetical protein. (753 aa)    
Predicted Functional Partners:
SFP05027.1
Yip1 domain-containing protein.
 
    0.955
SFP15634.1
ABC-2 type transport system permease protein.
  
 0.954
SFP04984.1
ABC-type sugar transport system, permease component.
     0.944
SFP05050.1
ABC-type glycerol-3-phosphate transport system, permease component.
 
     0.938
SFP05104.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
 
     0.937
SFP04959.1
Multiple sugar transport system permease protein.
 
     0.933
SFP05075.1
Multiple sugar transport system permease protein.
 
     0.928
SFP05127.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
 
     0.908
SFP04918.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
 
     0.898
SFP04936.1
Hypothetical protein.
 
     0.864
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.