STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP05641.1Uncharacterized protein YpmS. (214 aa)    
Predicted Functional Partners:
SFP05614.1
Lysophospholipase L1.
 
  
 0.962
SFP25286.1
Uncharacterized protein YozE, UPF0346 family; Belongs to the UPF0346 family.
 
   
 0.693
SFP30739.1
Tfp pilus assembly protein PilF.
  
     0.692
SFP17725.1
YkyB-like protein.
  
     0.668
SFP30225.1
Uncharacterized protein YpbB.
  
     0.656
SFP40762.1
Predicted small secreted protein.
  
     0.626
SFP21085.1
Site-specific DNA recombinase.
  
     0.585
SFP28633.1
YpjP-like protein.
  
     0.585
SFO92702.1
Site-specific DNA-methyltransferase (adenine-specific).
  
     0.579
SFO91361.1
Hypothetical protein.
  
     0.556
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.