STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP06881.1Polar amino acid transport system ATP-binding protein. (246 aa)    
Predicted Functional Partners:
SFP06909.1
Polar amino acid transport system permease protein.
 0.999
SFP18330.1
Polar amino acid transport system permease protein.
 0.995
SFP15379.1
Cystine transport system permease protein.
 0.993
SFP06937.1
Polar amino acid transport system substrate-binding protein.
 
 0.978
SFP76646.1
Polar amino acid transport system permease protein.
 0.963
SFP76621.1
Polar amino acid transport system permease protein.
 0.958
SFP36167.1
Oligopeptide transport system permease protein.
 
   
 0.934
SFP38303.1
Peptide/nickel transport system permease protein.
 
   
 0.930
SFP18357.1
Polar amino acid transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.928
SFP15335.1
Cystine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.904
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.