STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP15634.1ABC-2 type transport system permease protein. (258 aa)    
Predicted Functional Partners:
SFP15659.1
ABC-2 type transport system ATP-binding protein.
 
 0.990
SFP05006.1
Hypothetical protein.
  
 0.954
SFP15681.1
Phospholipase_D-nuclease N-terminal.
  
    0.883
SFP47883.1
ABC-2 type transport system ATP-binding protein.
  
 0.879
SFP78234.1
ABC-2 type transport system ATP-binding protein.
  
 0.879
SFP18217.1
ABC-2 type transport system ATP-binding protein.
  
 0.876
SFP73311.1
ABC-2 type transport system ATP-binding protein.
  
 0.876
SFP07959.1
ABC-2 type transport system ATP-binding protein.
  
 0.874
SFP34912.1
ABC-2 type transport system ATP-binding protein.
  
 0.874
SFP62101.1
ABC-2 type transport system ATP-binding protein.
  
 0.874
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.