STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP16184.1Predicted transcriptional regulator, ArsR family. (223 aa)    
Predicted Functional Partners:
SFP02471.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
    0.695
SFP04347.1
AAA domain-containing protein.
  
     0.564
SFP16544.1
Fur family transcriptional regulator, peroxide stress response regulator; Belongs to the Fur family.
  
    0.562
SFP23552.1
Fur family transcriptional regulator, zinc uptake regulator/Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
    0.562
SFP29884.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
    0.562
SFP55497.1
Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family.
  
    0.562
SFP38517.1
Signal transduction histidine kinase.
  
     0.405
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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