Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFO89410.1 | SFP20943.1 | SAMN05421839_10177 | SAMN05421839_10939 | Protein of unknown function. | Hypothetical protein. | 0.530 |
SFO90166.1 | SFP20943.1 | SAMN05421839_101108 | SAMN05421839_10939 | Post-transcriptional regulator. | Hypothetical protein. | 0.505 |
SFO96245.1 | SFP20943.1 | SAMN05421839_10255 | SAMN05421839_10939 | Cell fate regulator YmcA, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development); Belongs to the UPF0342 family. | Hypothetical protein. | 0.593 |
SFO96245.1 | SFP30789.1 | SAMN05421839_10255 | SAMN05421839_11360 | Cell fate regulator YmcA, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development); Belongs to the UPF0342 family. | Uncharacterized membrane protein YpjA. | 0.731 |
SFO96245.1 | pcrB | SAMN05421839_10255 | SAMN05421839_1531 | Cell fate regulator YmcA, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development); Belongs to the UPF0342 family. | Putative glycerol-1-phosphate prenyltransferase; Prenyltransferase that catalyzes in vivo the transfer of the heptaprenyl moiety of heptaprenyl pyrophosphate (HepPP; 35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond- formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales. | 0.722 |
SFP20943.1 | SFO89410.1 | SAMN05421839_10939 | SAMN05421839_10177 | Hypothetical protein. | Protein of unknown function. | 0.530 |
SFP20943.1 | SFO90166.1 | SAMN05421839_10939 | SAMN05421839_101108 | Hypothetical protein. | Post-transcriptional regulator. | 0.505 |
SFP20943.1 | SFO96245.1 | SAMN05421839_10939 | SAMN05421839_10255 | Hypothetical protein. | Cell fate regulator YmcA, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development); Belongs to the UPF0342 family. | 0.593 |
SFP20943.1 | SFP20965.1 | SAMN05421839_10939 | SAMN05421839_10940 | Hypothetical protein. | acyl-CoA thioester hydrolase. | 0.818 |
SFP20943.1 | SFP20987.1 | SAMN05421839_10939 | SAMN05421839_10941 | Hypothetical protein. | AAA+-type ATPase, SpoVK/Ycf46/Vps4 family. | 0.800 |
SFP20943.1 | SFP21002.1 | SAMN05421839_10939 | SAMN05421839_10942 | Hypothetical protein. | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.479 |
SFP20943.1 | SFP30789.1 | SAMN05421839_10939 | SAMN05421839_11360 | Hypothetical protein. | Uncharacterized membrane protein YpjA. | 0.553 |
SFP20943.1 | SFP43959.1 | SAMN05421839_10939 | SAMN05421839_12034 | Hypothetical protein. | Uncharacterized membrane protein YesL. | 0.714 |
SFP20943.1 | nadE | SAMN05421839_10939 | SAMN05421839_101120 | Hypothetical protein. | NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.546 |
SFP20943.1 | pcrB | SAMN05421839_10939 | SAMN05421839_1531 | Hypothetical protein. | Putative glycerol-1-phosphate prenyltransferase; Prenyltransferase that catalyzes in vivo the transfer of the heptaprenyl moiety of heptaprenyl pyrophosphate (HepPP; 35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond- formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales. | 0.551 |
SFP20965.1 | SFP20943.1 | SAMN05421839_10940 | SAMN05421839_10939 | acyl-CoA thioester hydrolase. | Hypothetical protein. | 0.818 |
SFP20965.1 | SFP20987.1 | SAMN05421839_10940 | SAMN05421839_10941 | acyl-CoA thioester hydrolase. | AAA+-type ATPase, SpoVK/Ycf46/Vps4 family. | 0.800 |
SFP20965.1 | SFP21002.1 | SAMN05421839_10940 | SAMN05421839_10942 | acyl-CoA thioester hydrolase. | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.515 |
SFP20987.1 | SFP20943.1 | SAMN05421839_10941 | SAMN05421839_10939 | AAA+-type ATPase, SpoVK/Ycf46/Vps4 family. | Hypothetical protein. | 0.800 |
SFP20987.1 | SFP20965.1 | SAMN05421839_10941 | SAMN05421839_10940 | AAA+-type ATPase, SpoVK/Ycf46/Vps4 family. | acyl-CoA thioester hydrolase. | 0.800 |
page 1 of 2