STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP34786.1Glycine betaine/proline transport system substrate-binding protein. (304 aa)    
Predicted Functional Partners:
SFP34753.1
Glycine betaine/proline transport system permease protein/glycine betaine/proline transport system substrate-binding protein.
 
 0.998
SFP34720.1
Glycine betaine/proline transport system ATP-binding protein.
 0.997
SFP14604.1
Osmoprotectant transport system permease protein.
 
 
 0.939
SFP13225.1
Osmoprotectant transport system permease protein.
 
 
 0.936
SFP13174.1
Osmoprotectant transport system permease protein.
 
 
 0.906
SFP61048.1
Zinc-ribbon domain-containing protein.
  
 
 0.852
SFP17562.1
Choline/glycine/proline betaine transport protein; Belongs to the BCCT transporter (TC 2.A.15) family.
    
 0.589
SFP38389.1
Glycine betaine/proline transport system substrate-binding protein.
  
  
 
0.520
SFP34689.1
DNA-binding transcriptional regulator GbsR, MarR family; Belongs to the GbsR family.
 
     0.470
SFP46815.1
Acetaldehyde dehydrogenase / alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.419
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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