STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP38107.1GntR family transcriptional regulator. (242 aa)    
Predicted Functional Partners:
SFO92460.1
Regulatory protein, gntR family.
  
    0.789
SFP02452.1
AraC-type DNA-binding protein.
   
  
 0.553
SFP41928.1
AraC-like ligand binding domain-containing protein.
   
  
 0.553
SFP27420.1
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.492
SFP38088.1
Oligoendopeptidase, pepF/M3 family.
       0.460
SFP52840.1
PTS system, D-glucosamine-specific IIC component.
 
 
 0.429
SFP10622.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
  
 0.424
SFP58144.1
DNA-binding transcriptional regulator, IclR family.
  
     0.414
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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