STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP40545.1Hypothetical protein. (346 aa)    
Predicted Functional Partners:
SFP40506.1
Thioredoxin.
     
 0.777
SFP43882.1
PTS system, fructose-specific IIC component.
    
  0.750
SFP64890.1
PTS system, fructose-specific IIC component.
    
  0.750
SFP42112.1
PTS system, galactitol-specific IIA component.
  
  
  0.563
SFP40471.1
Uncharacterized protein YtpQ, UPF0354 family.
       0.550
SFP40449.1
tRNA-binding protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.518
SFP40393.1
Nicotinate phosphoribosyltransferase; Belongs to the NAPRTase family.
 
     0.507
SFP40574.1
Hypothetical protein.
       0.506
SFP15078.1
PTS system, glucose-specific IIA component.
     
 0.504
SFP15431.1
Putative redox protein.
  
     0.439
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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