STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP41652.1DNA-binding transcriptional regulator, MarR family. (145 aa)    
Predicted Functional Partners:
SFP41683.1
Nitroreductase.
 
 
 0.970
SFP22945.1
PTS system, sucrose-specific IIC component.
     
 0.693
SFP49363.1
PTS system, D-glucosamine-specific IIC component/PTS system, maltose and glucose-specific IIC component.
     
 0.693
SFP49503.1
PTS system, beta-glucosides-specific IIC component.
     
 0.693
SFP52840.1
PTS system, D-glucosamine-specific IIC component.
     
 0.693
SFP59981.1
PTS system, beta-glucosides-specific IIC component.
     
 0.693
SFP60021.1
PTS system, beta-glucosides-specific IIC component.
     
 0.693
SFP07157.1
DNA binding domain-containing protein, excisionase family.
  
  
  0.484
SFP38366.1
Hypothetical protein.
  
 
  0.468
SFP26167.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.465
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.