STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP52704.1Polymer-forming protein. (177 aa)    
Predicted Functional Partners:
SFO89900.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.827
SFP21138.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.760
SFP21586.1
Cpl-7 lysozyme C-terminal domain-containing protein.
    
 0.592
SFO99909.1
Penicillin-binding protein 2B.
     
 0.523
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
    
 0.498
SFP64413.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
 
 0.485
SFO87953.1
Cell division protein FtsI/penicillin-binding protein 2.
     
 0.462
SFP43692.1
Penicillin-binding protein.
     
 0.462
SFP52727.1
S1 RNA binding domain protein.
  
    0.436
SFP08141.1
Protein of unknown function.
   
 
  0.422
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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