STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP55744.1Fe-S cluster assembly protein SufD. (433 aa)    
Predicted Functional Partners:
SFP55723.1
Fe-S cluster assembly ATP-binding protein.
 0.999
SFP55769.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 0.998
SFP55787.1
Nitrogen fixation protein NifU.
 
 
 0.985
SFP55814.1
Iron-regulated ABC transporter membrane component SufB.
 
 
0.975
SFP36507.1
Metal-sulfur cluster biosynthetic enzyme.
 
   
 0.695
SFP71362.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.599
SFO92781.1
Cysteine desulfurase.
  
 
 0.467
SFO89763.1
Cysteine desulfurase.
  
 
 0.467
SFP07664.1
Cysteine desulfurase.
  
 
 0.467
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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