STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP56423.1DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains. (300 aa)    
Predicted Functional Partners:
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
  
 0.925
SFP56479.1
PTS system, sucrose-specific IIC component.
 
 
 0.897
SFP56506.1
Hypothetical protein.
 
     0.817
SFP22945.1
PTS system, sucrose-specific IIC component.
  
 
 0.779
SFP49363.1
PTS system, D-glucosamine-specific IIC component/PTS system, maltose and glucose-specific IIC component.
  
 
 0.779
SFP49503.1
PTS system, beta-glucosides-specific IIC component.
  
 
 0.779
SFP52840.1
PTS system, D-glucosamine-specific IIC component.
  
 
 0.779
SFP59981.1
PTS system, beta-glucosides-specific IIC component.
  
 
 0.779
SFP60021.1
PTS system, beta-glucosides-specific IIC component.
  
 
 0.779
SFP58169.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
 
  
 0.530
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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