STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP66733.1Tetratricopeptide repeat-containing protein. (411 aa)    
Predicted Functional Partners:
SFP34245.1
Hypothetical protein.
  
  
  0.748
SFP66764.1
Hypothetical protein.
       0.718
cinA
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.714
SFO97961.1
Hook-length control protein FliK.
  
     0.683
SFO99928.1
Cell division protein FtsL.
  
     0.652
SFP61027.1
Helix-turn-helix.
  
  
 
0.628
SFP12774.1
Branched-chain amino acid transport protein (AzlD).
  
     0.611
SFO90166.1
Post-transcriptional regulator.
  
     0.557
SFO97738.1
Two-component system, chemotaxis family, response regulator CheY.
    
  0.552
SFP36649.1
Two-component system, NarL family, competent response regulator ComA.
    
  0.501
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.