STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP68923.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (479 aa)    
Predicted Functional Partners:
SFO97767.1
Flagellar motor switch protein FliN/FliY.
    
   0.803
SFP79061.1
Protein of unknown function.
  
  
 0.593
SFP69024.1
Two-component signal transduction system YycFG, regulatory protein YycI.
 
     0.582
SFP69004.1
Two-component signal transduction system YycFG, regulatory protein YycH.
 
     0.573
SFP70679.1
Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains.
 
  
 0.548
SFP24960.1
Penicillin-binding protein 1A.
  
     0.541
SFP68976.1
Two-component system, OmpR family, sensor histidine kinase VicK.
       0.515
SFP69061.1
Phosphoribosyl 1,2-cyclic phosphodiesterase.
       0.515
SFP40133.1
Penicillin-binding protein.
  
     0.496
SFP64413.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
 
 
 0.496
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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