STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP70380.1Hypothetical protein. (146 aa)    
Predicted Functional Partners:
SFP70352.1
Uncharacterized protein YaaQ.
 
    0.939
SFP43454.1
Flagellar operon protein TIGR03826.
 
     0.770
SFO97706.1
Flagellar protein FliO/FliZ.
  
     0.725
SFO98389.1
Hypothetical protein.
  
 
   0.723
SFO97820.1
Flagellar FliL protein.
 
     0.691
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.690
SFP43399.1
FlgN protein.
 
     0.683
SFP70288.1
Lysine decarboxylase.
  
    0.670
SFP30315.1
c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains.
  
     0.664
SFP70437.1
Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development).
  
  
 0.652
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.