STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP76128.1Lia operon protein LiaF. (238 aa)    
Predicted Functional Partners:
SFO90166.1
Post-transcriptional regulator.
  
     0.719
SFO98389.1
Hypothetical protein.
  
   
 0.681
SFP36674.1
Two-component system, NarL family, sensor histidine kinase ComP.
  
  
 0.680
SFP43590.1
Two-component system, NarL family, sensor histidine kinase DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase.
  
  
 0.680
SFP34245.1
Hypothetical protein.
  
     0.670
SFP76104.1
Penicillin-binding protein 2A.
 
    0.662
SFO87930.1
Hypothetical protein.
 
     0.652
SFP34689.1
DNA-binding transcriptional regulator GbsR, MarR family; Belongs to the GbsR family.
  
     0.631
SFP43769.1
SurA N-terminal domain-containing protein.
  
     0.607
SFP76153.1
Transposase, IS605 OrfB family, central region.
       0.584
Your Current Organism:
Halolactibacillus halophilus
NCBI taxonomy Id: 306540
Other names: DSM 17073, H. halophilus, Halolactibacillus halophilus Ishikawa et al. 2005, Halolactobacillus halophilus, IAM 15242, JCM 21694, NBRC 100868, NRIC 0628, strain M2-2
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