STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D8TLE4_VOLCANUC173 domain-containing protein. (1528 aa)    
Predicted Functional Partners:
D8TPW9_VOLCA
Uncharacterized protein.
   
 
 0.999
D8UF13_VOLCA
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.999
D8UH33_VOLCA
WD_REPEATS_REGION domain-containing protein.
   
 
 0.997
D8TSR7_VOLCA
DUF663 domain-containing protein.
   
 
 0.994
D8TQ59_VOLCA
Bystin-like protein.
   
 
 0.993
D8TI14_VOLCA
Uncharacterized protein.
   
 
 0.992
rrp5
rRNA processing protein Rrp5/programmed cell death protein 11.
   
 
 0.983
D8TJ80_VOLCA
Nop domain-containing protein.
   
 
 0.977
D8TP35_VOLCA
KH domain-containing protein.
   
 
 0.976
D8TLU3_VOLCA
Uncharacterized protein.
   
 
 0.972
Your Current Organism:
Volvox carteri
NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar
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