D8TLF8_VOLCA protein (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8TLF8_VOLCA

Dynein heavy chain 4. (3871 aa)

Predicted Functional Partners:

D8U2C3_VOLCA

0.674

D8UHI3_VOLCA

0.605

D8TWW0_VOLCA

0.594

D8TTY0_VOLCA

0.564

dlc7

0.536

D8TP07_VOLCA

0.535

D8UDZ5_VOLCA

0.530

tctex1

0.528

tubE

0.527

tubB1

0.527

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TLF8_VOLCA	D8TP07_VOLCA	D8TLF8	D8TP07	Dynein heavy chain 4.	WD_REPEATS_REGION domain-containing protein.	0.535
D8TLF8_VOLCA	D8TTY0_VOLCA	D8TLF8	D8TTY0	Dynein heavy chain 4.	Uncharacterized protein.	0.564
D8TLF8_VOLCA	D8TWW0_VOLCA	D8TLF8	D8TWW0	Dynein heavy chain 4.	Uncharacterized protein.	0.594
D8TLF8_VOLCA	D8U2C3_VOLCA	D8TLF8	D8U2C3	Dynein heavy chain 4.	Uncharacterized protein.	0.674
D8TLF8_VOLCA	D8UDZ5_VOLCA	D8TLF8	D8UDZ5	Dynein heavy chain 4.	Uncharacterized protein.	0.530
D8TLF8_VOLCA	D8UHI3_VOLCA	D8TLF8	D8UHI3	Dynein heavy chain 4.	WD_REPEATS_REGION domain-containing protein.	0.605
D8TLF8_VOLCA	dlc7	D8TLF8	D8U1L0	Dynein heavy chain 4.	Dynein light chain roadblock.	0.536
D8TLF8_VOLCA	tctex1	D8TLF8	D8U9H4	Dynein heavy chain 4.	Flagellar inner arm dynein light chain.	0.528
D8TLF8_VOLCA	tubB1	D8TLF8	D8U4T0	Dynein heavy chain 4.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.527
D8TLF8_VOLCA	tubE	D8TLF8	D8TK46	Dynein heavy chain 4.	Epsilon tubulin; Belongs to the tubulin family.	0.527
D8TP07_VOLCA	D8TLF8_VOLCA	D8TP07	D8TLF8	WD_REPEATS_REGION domain-containing protein.	Dynein heavy chain 4.	0.535
D8TP07_VOLCA	D8TTY0_VOLCA	D8TP07	D8TTY0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.777
D8TP07_VOLCA	D8TWW0_VOLCA	D8TP07	D8TWW0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.952
D8TP07_VOLCA	D8UDZ5_VOLCA	D8TP07	D8UDZ5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.723
D8TP07_VOLCA	D8UHI3_VOLCA	D8TP07	D8UHI3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.946
D8TP07_VOLCA	dlc7	D8TP07	D8U1L0	WD_REPEATS_REGION domain-containing protein.	Dynein light chain roadblock.	0.970
D8TP07_VOLCA	tctex1	D8TP07	D8U9H4	WD_REPEATS_REGION domain-containing protein.	Flagellar inner arm dynein light chain.	0.758
D8TP07_VOLCA	tubB1	D8TP07	D8U4T0	WD_REPEATS_REGION domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.873
D8TP07_VOLCA	tubE	D8TP07	D8TK46	WD_REPEATS_REGION domain-containing protein.	Epsilon tubulin; Belongs to the tubulin family.	0.677
D8TTY0_VOLCA	D8TLF8_VOLCA	D8TTY0	D8TLF8	Uncharacterized protein.	Dynein heavy chain 4.	0.564