D8TVZ8_VOLCA protein (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8TVZ8_VOLCA

Uncharacterized protein. (941 aa)

Predicted Functional Partners:

D8TLH1_VOLCA

0.962

D8TPF1_VOLCA

0.962

D8TW99_VOLCA

0.962

D8UK30_VOLCA

0.962

D8TP08_VOLCA

0.959

D8U7H7_VOLCA

0.959

D8TUC5_VOLCA

0.953

D8TZN0_VOLCA

0.951

D8TQG5_VOLCA

0.945

D8UF21_VOLCA

0.906

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TLH1_VOLCA	D8TP08_VOLCA	D8TLH1	D8TP08	CPSF_A domain-containing protein.	Suf domain-containing protein.	0.986
D8TLH1_VOLCA	D8TPF1_VOLCA	D8TLH1	D8TPF1	CPSF_A domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
D8TLH1_VOLCA	D8TQG5_VOLCA	D8TLH1	D8TQG5	CPSF_A domain-containing protein.	Uncharacterized protein.	0.947
D8TLH1_VOLCA	D8TUC5_VOLCA	D8TLH1	D8TUC5	CPSF_A domain-containing protein.	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing.	0.824
D8TLH1_VOLCA	D8TVZ8_VOLCA	D8TLH1	D8TVZ8	CPSF_A domain-containing protein.	Uncharacterized protein.	0.962
D8TLH1_VOLCA	D8TW99_VOLCA	D8TLH1	D8TW99	CPSF_A domain-containing protein.	Uncharacterized protein.	0.997
D8TLH1_VOLCA	D8TZN0_VOLCA	D8TLH1	D8TZN0	CPSF_A domain-containing protein.	Uncharacterized protein.	0.996
D8TLH1_VOLCA	D8U7H7_VOLCA	D8TLH1	D8U7H7	CPSF_A domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.987
D8TLH1_VOLCA	D8UF21_VOLCA	D8TLH1	D8UF21	CPSF_A domain-containing protein.	Uncharacterized protein.	0.872
D8TLH1_VOLCA	D8UK30_VOLCA	D8TLH1	D8UK30	CPSF_A domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
D8TP08_VOLCA	D8TLH1_VOLCA	D8TP08	D8TLH1	Suf domain-containing protein.	CPSF_A domain-containing protein.	0.986
D8TP08_VOLCA	D8TPF1_VOLCA	D8TP08	D8TPF1	Suf domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.935
D8TP08_VOLCA	D8TUC5_VOLCA	D8TP08	D8TUC5	Suf domain-containing protein.	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing.	0.839
D8TP08_VOLCA	D8TVZ8_VOLCA	D8TP08	D8TVZ8	Suf domain-containing protein.	Uncharacterized protein.	0.959
D8TP08_VOLCA	D8TW99_VOLCA	D8TP08	D8TW99	Suf domain-containing protein.	Uncharacterized protein.	0.988
D8TP08_VOLCA	D8TZN0_VOLCA	D8TP08	D8TZN0	Suf domain-containing protein.	Uncharacterized protein.	0.646
D8TP08_VOLCA	D8U7H7_VOLCA	D8TP08	D8U7H7	Suf domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.979
D8TP08_VOLCA	D8UF21_VOLCA	D8TP08	D8UF21	Suf domain-containing protein.	Uncharacterized protein.	0.940
D8TP08_VOLCA	D8UK30_VOLCA	D8TP08	D8UK30	Suf domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.977
D8TPF1_VOLCA	D8TLH1_VOLCA	D8TPF1	D8TLH1	Cleavage and polyadenylation specificity factor subunit 2.	CPSF_A domain-containing protein.	0.999