Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
D8TKW7_VOLCA | D8U4T5_VOLCA | D8TKW7 | D8U4T5 | GRANULINS domain-containing protein; Belongs to the peptidase C1 family. | Flavin-containing monooxygenase. | 0.402 |
D8U4L4_VOLCA | D8U4T5_VOLCA | D8U4L4 | D8U4T5 | FHA domain-containing protein. | Flavin-containing monooxygenase. | 0.666 |
D8U4T5_VOLCA | D8TKW7_VOLCA | D8U4T5 | D8TKW7 | Flavin-containing monooxygenase. | GRANULINS domain-containing protein; Belongs to the peptidase C1 family. | 0.402 |
D8U4T5_VOLCA | D8U4L4_VOLCA | D8U4T5 | D8U4L4 | Flavin-containing monooxygenase. | FHA domain-containing protein. | 0.666 |
D8U4T5_VOLCA | UVR8 | D8U4T5 | D8UKL7 | Flavin-containing monooxygenase. | UVR8 photoreceptor variant 2. | 0.487 |
D8U4T5_VOLCA | hstH4-13 | D8U4T5 | D8TP21 | Flavin-containing monooxygenase. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.631 |
D8U4T5_VOLCA | hstH4-8 | D8U4T5 | D8THQ3 | Flavin-containing monooxygenase. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.631 |
D8U4T5_VOLCA | mca1 | D8U4T5 | D8TNV9 | Flavin-containing monooxygenase. | Metacaspase type I. | 0.632 |
UVR8 | D8U4T5_VOLCA | D8UKL7 | D8U4T5 | UVR8 photoreceptor variant 2. | Flavin-containing monooxygenase. | 0.487 |
hstH4-13 | D8U4T5_VOLCA | D8TP21 | D8U4T5 | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | Flavin-containing monooxygenase. | 0.631 |
hstH4-8 | D8U4T5_VOLCA | D8THQ3 | D8U4T5 | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | Flavin-containing monooxygenase. | 0.631 |
mca1 | D8U4T5_VOLCA | D8TNV9 | D8U4T5 | Metacaspase type I. | Flavin-containing monooxygenase. | 0.632 |