CLUG_00035 protein (Clavispora lusitaniae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLUG_00035

Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (938 aa)

Predicted Functional Partners:

CLUG_04135

0.999

CLUG_04408

0.999

CLUG_03745

0.986

CLUG_01553

0.936

CLUG_04935

0.776

VPS10

0.734

CLUG_02889

0.635

CLUG_00966

0.562

CLUG_01482

0.556

CLUG_02892

0.547

Your Current Organism:

Clavispora lusitaniae

NCBI taxonomy Id: 306902
Other names: C. lusitaniae ATCC 42720, Candida lusitaniae ATCC 42720, Clavispora lusitaniae ATCC 42720

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLUG_00035	CLUG_00966	C4XVR8	C4XYE3	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.562
CLUG_00035	CLUG_01482	C4XVR8	C4XZV0	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	UBA domain-containing protein.	0.556
CLUG_00035	CLUG_01553	C4XVR8	C4Y021	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.936
CLUG_00035	CLUG_02889	C4XVR8	C4Y2X6	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.635
CLUG_00035	CLUG_02892	C4XVR8	C4Y2X9	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.547
CLUG_00035	CLUG_03745	C4XVR8	C4Y6G2	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.986
CLUG_00035	CLUG_04135	C4XVR8	C4Y7F7	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.999
CLUG_00035	CLUG_04408	C4XVR8	C4Y880	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.999
CLUG_00035	CLUG_04935	C4XVR8	C4Y9P5	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Rab-GAP TBC domain-containing protein.	0.776
CLUG_00035	VPS10	C4XVR8	C4Y3C1	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting/targeting protein 10; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A. Executes multiple rounds of sorting by cycling between the late Golgi and a prevacuolar endosome-like compartment (By similarity); Belongs to the VPS10-related sortilin family.	0.734
CLUG_00966	CLUG_00035	C4XYE3	C4XVR8	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.562
CLUG_00966	CLUG_03745	C4XYE3	C4Y6G2	Uncharacterized protein.	PX domain-containing protein.	0.586
CLUG_00966	CLUG_04408	C4XYE3	C4Y880	Uncharacterized protein.	Uncharacterized protein.	0.418
CLUG_00966	VPS10	C4XYE3	C4Y3C1	Uncharacterized protein.	Vacuolar protein sorting/targeting protein 10; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A. Executes multiple rounds of sorting by cycling between the late Golgi and a prevacuolar endosome-like compartment (By similarity); Belongs to the VPS10-related sortilin family.	0.439
CLUG_01482	CLUG_00035	C4XZV0	C4XVR8	UBA domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.556
CLUG_01482	CLUG_03745	C4XZV0	C4Y6G2	UBA domain-containing protein.	PX domain-containing protein.	0.506
CLUG_01482	VPS10	C4XZV0	C4Y3C1	UBA domain-containing protein.	Vacuolar protein sorting/targeting protein 10; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A. Executes multiple rounds of sorting by cycling between the late Golgi and a prevacuolar endosome-like compartment (By similarity); Belongs to the VPS10-related sortilin family.	0.486
CLUG_01553	CLUG_00035	C4Y021	C4XVR8	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.936
CLUG_01553	CLUG_02889	C4Y021	C4Y2X6	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	PX domain-containing protein.	0.552
CLUG_01553	CLUG_03745	C4Y021	C4Y6G2	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	PX domain-containing protein.	0.906