CLUG_03562 protein (Clavispora lusitaniae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLUG_03562

Uncharacterized protein. (2038 aa)

Predicted Functional Partners:

CLUG_05401

0.662

CLUG_05667

0.659

CLUG_00980

0.490

CLUG_05421

0.453

CLUG_03312

0.442

CLUG_05200

0.434

CLUG_01085

0.433

CLUG_04674

0.406

Your Current Organism:

Clavispora lusitaniae

NCBI taxonomy Id: 306902
Other names: C. lusitaniae ATCC 42720, Candida lusitaniae ATCC 42720, Clavispora lusitaniae ATCC 42720

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLUG_00980	CLUG_03312	C4XYF7	C4Y578	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.586
CLUG_00980	CLUG_03562	C4XYF7	C4Y5X8	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Uncharacterized protein.	0.490
CLUG_00980	CLUG_04674	C4XYF7	C4Y8Z7	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Uncharacterized protein; Belongs to the V-ATPase proteolipid subunit family.	0.999
CLUG_01085	CLUG_03562	C4XYR2	C4Y5X8	Uncharacterized protein.	Uncharacterized protein.	0.433
CLUG_03312	CLUG_00980	C4Y578	C4XYF7	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.586
CLUG_03312	CLUG_03562	C4Y578	C4Y5X8	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Uncharacterized protein.	0.442
CLUG_03562	CLUG_00980	C4Y5X8	C4XYF7	Uncharacterized protein.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.490
CLUG_03562	CLUG_01085	C4Y5X8	C4XYR2	Uncharacterized protein.	Uncharacterized protein.	0.433
CLUG_03562	CLUG_03312	C4Y5X8	C4Y578	Uncharacterized protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.442
CLUG_03562	CLUG_04674	C4Y5X8	C4Y8Z7	Uncharacterized protein.	Uncharacterized protein; Belongs to the V-ATPase proteolipid subunit family.	0.406
CLUG_03562	CLUG_05200	C4Y5X8	C4Y9X9	Uncharacterized protein.	SRP40_C domain-containing protein.	0.434
CLUG_03562	CLUG_05401	C4Y5X8	C4YAT6	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.662
CLUG_03562	CLUG_05421	C4Y5X8	C4YAV6	Uncharacterized protein.	SAC domain-containing protein.	0.453
CLUG_03562	CLUG_05667	C4Y5X8	C4YBT9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.659
CLUG_04674	CLUG_00980	C4Y8Z7	C4XYF7	Uncharacterized protein; Belongs to the V-ATPase proteolipid subunit family.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.999
CLUG_04674	CLUG_03562	C4Y8Z7	C4Y5X8	Uncharacterized protein; Belongs to the V-ATPase proteolipid subunit family.	Uncharacterized protein.	0.406
CLUG_05200	CLUG_03562	C4Y9X9	C4Y5X8	SRP40_C domain-containing protein.	Uncharacterized protein.	0.434
CLUG_05401	CLUG_03562	C4YAT6	C4Y5X8	Endo/exonuclease/phosphatase domain-containing protein.	Uncharacterized protein.	0.662
CLUG_05401	CLUG_05667	C4YAT6	C4YBT9	Endo/exonuclease/phosphatase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.583
CLUG_05421	CLUG_03562	C4YAV6	C4Y5X8	SAC domain-containing protein.	Uncharacterized protein.	0.453