STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBV25194.1L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (405 aa)    
Predicted Functional Partners:
SBV25192.1
Multiple sugar transport system permease protein.
 
     0.957
SBV25191.1
Multiple sugar transport system substrate-binding protein.
 
     0.952
SBV25193.1
Multiple sugar transport system permease protein.
 
     0.933
SBV25190.1
DNA-binding transcriptional regulator, FadR family.
 
     0.767
SBV25952.1
Galactonate dehydratase.
  
  
 
0.665
SBV25395.1
Galactonate dehydratase.
  
  
 
0.664
SBV25396.1
D-mannonate dehydratase.
  
  
 
0.657
SBV25159.1
Galactonate dehydratase.
  
  
 
0.653
SBV25605.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
    
 0.634
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
 0.634
Your Current Organism:
Micromonospora krabiensis
NCBI taxonomy Id: 307121
Other names: DSM 45344, JCM 12869, M. krabiensis, Micromonospora krabiensis Jongrungruangchok et al. 2008, PCU 268, PCU:268, strain MA-2
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