STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBV26411.1Protein of unknown function. (168 aa)    
Predicted Functional Partners:
SBV25003.1
Protein of unknown function.
  
     0.639
SBV26412.1
D-Ala-D-Ala dipeptidase vanX. Metallo peptidase. MEROPS family M15D; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
       0.548
SBV27471.1
Glyoxalase-like domain-containing protein.
  
     0.517
SBV28117.1
Glyoxalase-like domain-containing protein.
  
     0.515
SBV26413.1
cephalosporin-C deacetylase.
       0.446
SBV26414.1
Beta-xylosidase.
       0.446
SBV30211.1
Glyoxalase-like domain-containing protein.
  
     0.434
SBV29719.1
Glyoxalase-like domain-containing protein.
  
     0.422
SBV25600.1
Hypothetical protein.
  
     0.414
SBV30077.1
Hypothetical protein.
  
     0.414
Your Current Organism:
Micromonospora krabiensis
NCBI taxonomy Id: 307121
Other names: DSM 45344, JCM 12869, M. krabiensis, Micromonospora krabiensis Jongrungruangchok et al. 2008, PCU 268, PCU:268, strain MA-2
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