Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SBV27078.1 | SBV27079.1 | GA0070620_2582 | GA0070620_2583 | Predicted dehydrogenase. | Transcriptional regulator, TetR family. | 0.553 |
SBV27078.1 | SBV27080.1 | GA0070620_2582 | GA0070620_2584 | Predicted dehydrogenase. | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | 0.427 |
SBV27079.1 | SBV27078.1 | GA0070620_2583 | GA0070620_2582 | Transcriptional regulator, TetR family. | Predicted dehydrogenase. | 0.553 |
SBV27079.1 | SBV27080.1 | GA0070620_2583 | GA0070620_2584 | Transcriptional regulator, TetR family. | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | 0.581 |
SBV27080.1 | SBV27078.1 | GA0070620_2584 | GA0070620_2582 | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | Predicted dehydrogenase. | 0.427 |
SBV27080.1 | SBV27079.1 | GA0070620_2584 | GA0070620_2583 | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | Transcriptional regulator, TetR family. | 0.581 |
SBV27080.1 | gpmA | GA0070620_2584 | GA0070620_4971 | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.465 |
SBV27080.1 | hemE | GA0070620_2584 | GA0070620_2659 | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.409 |
gpmA | SBV27080.1 | GA0070620_4971 | GA0070620_2584 | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | 0.465 |
hemE | SBV27080.1 | GA0070620_2659 | GA0070620_2584 | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | 0.409 |