STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBV28351.1Transcriptional regulatory protein, C terminal. (1185 aa)    
Predicted Functional Partners:
SBV28352.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.759
SBV28616.1
Signal transduction histidine kinase.
 
 0.622
SBV25676.1
PAS/PAC sensor hybrid histidine kinase.
  
 0.592
SBV25219.1
Hypothetical protein.
  
    0.548
SBV24587.1
Integrase core domain-containing protein; Manually curated.
  
     0.420
SBV30640.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.420
SBV30756.1
Acyltransferase family protein.
  
     0.420
SBV27308.1
Signal transduction histidine kinase.
   
  0.419
SBV30486.1
Hypothetical protein.
  
     0.408
SBV24800.1
Hemerythrin HHE cation binding domain-containing protein.
  
     0.402
Your Current Organism:
Micromonospora krabiensis
NCBI taxonomy Id: 307121
Other names: DSM 45344, JCM 12869, M. krabiensis, Micromonospora krabiensis Jongrungruangchok et al. 2008, PCU 268, PCU:268, strain MA-2
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