STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBV28420.1ABC-2 type transport system permease protein. (275 aa)    
Predicted Functional Partners:
SBV28419.1
ABC-2 type transport system ATP-binding protein.
 
 0.999
SBV26836.1
Teichoic acid transport system ATP-binding protein.
 
 0.992
SBV28417.1
CDP-glycerol glycerophosphotransferase.
 
  
 0.890
SBV28418.1
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.836
SBV28421.1
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
    0.583
SBV26835.1
Teichoic acid transport system permease protein.
  
  
 
0.529
SBV26088.1
Glycosyltransferase, GT2 family.
 
  
 0.519
SBV26845.1
Glycosyl transferase family 2.
 
  
 0.516
SBV25485.1
ABC-2 type transporter.
 
  
  0.492
SBV28416.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-); Belongs to the ABC transporter superfamily.
  
    0.467
Your Current Organism:
Micromonospora krabiensis
NCBI taxonomy Id: 307121
Other names: DSM 45344, JCM 12869, M. krabiensis, Micromonospora krabiensis Jongrungruangchok et al. 2008, PCU 268, PCU:268, strain MA-2
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