STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBV30408.1Predicted membrane protein. (608 aa)    
Predicted Functional Partners:
lipB
Lipoyl(octanoyl) transferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
       0.775
SBV30406.1
Catechol 2,3-dioxygenase.
       0.773
SBV28093.1
Hypothetical protein.
  
     0.661
SBV30053.1
Hypothetical protein.
  
     0.603
SBV30344.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.602
SBV29479.1
Hypothetical protein.
  
     0.598
SBV27034.1
Tetratricopeptide repeat-containing protein.
  
     0.589
SBV28779.1
Hypothetical protein.
  
    0.587
SBV28972.1
Hypothetical protein.
  
     0.581
SBV26841.1
Peptidase_C39 like family protein.
  
    0.580
Your Current Organism:
Micromonospora krabiensis
NCBI taxonomy Id: 307121
Other names: DSM 45344, JCM 12869, M. krabiensis, Micromonospora krabiensis Jongrungruangchok et al. 2008, PCU 268, PCU:268, strain MA-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.