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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112145979Uncharacterized protein. (346 aa)    
Predicted Functional Partners:
LOC112154083
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.734
ENSOMEP00000025597
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.734
ENSOMEP00000025633
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.734
ENSOMEP00000033953
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.734
vcam1
Uncharacterized protein.
    
 
0.711
ENSOMEP00000013546
Integrin alpha 4; Belongs to the integrin alpha chain family.
   
  0.669
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
   
  0.669
PTK7
Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.526
LOC112150849
Integrin beta; Belongs to the integrin beta chain family.
   
 0.509
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.509
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.