STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rybpRING1 and YY1 binding protein b. (414 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.956
rnf2
Ring finger protein 2.
    
 0.942
LOC112158264
THAP-type domain-containing protein.
   
 0.903
pcgf6
Polycomb group ring finger 6.
    
 0.900
l3mbtl2
L3MBTL histone methyl-lysine binding protein 2.
    
 0.896
pcgf1
Polycomb group ring finger 1.
    
 0.884
pcgf5
Polycomb group ring finger 5a.
    
 0.880
PCGF3
Polycomb group ring finger 3.
    
 0.845
mbtd1
Mbt domain containing 1.
    
 0.837
ENSOMEP00000012127
Uncharacterized protein.
    
 0.835
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.