STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcgf6Polycomb group ring finger 6. (255 aa)    
Predicted Functional Partners:
rnf2
Ring finger protein 2.
   
 0.958
RING1
Ring finger protein 1.
   
 0.936
YAF2
YY1 associated factor 2.
    
 0.919
LOC112158420
YY1 associated factor 2.
    
 0.919
LOC112158264
THAP-type domain-containing protein.
    
 0.914
l3mbtl2
L3MBTL histone methyl-lysine binding protein 2.
    
 0.913
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.903
rybp
RING1 and YY1 binding protein b.
    
 0.900
mbtd1
Mbt domain containing 1.
    
 0.862
ENSOMEP00000018932
Embryonic ectoderm development.
    
 0.847
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.