STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000000683Si:ch211-247j9.1. (678 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
    
 0.655
LOC112144774
Cell division cycle 42.
    
 0.655
rnd3
Rho family GTPase 3a.
   
 0.555
LOC112163132
Ras homolog family member F.
   
 0.548
LOC112159709
Uncharacterized protein.
   
 0.546
LOC112159654
Rho family GTPase 1b.
   
 0.546
LOC112143725
Uncharacterized protein.
    
 0.543
LOC112137131
Uncharacterized protein.
    
 0.543
LOC112139281
Uncharacterized protein.
    
 0.543
LOC112144861
Uncharacterized protein.
    
 0.542
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.