STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112163226Lysyl oxidase a. (406 aa)    
Predicted Functional Partners:
ENSOMEP00000010857
Uncharacterized protein.
   
 0.753
ENSOMEP00000035279
Fibulin 5.
   
 0.753
MFAP2
Microfibril associated protein 2.
   
 
 0.737
ENSOMEP00000014953
Fibronectin 1a.
   
 0.722
ENSOMEP00000010591
Uncharacterized protein.
   
  0.623
ENSOMEP00000021778
Uncharacterized protein.
   
  0.623
LOC112143726
Microfibril associated protein 5.
   
 
 0.604
ppic
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.588
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.568
slf1
SMC5-SMC6 complex localization factor 1.
   
 0.565
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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