STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000001005Zgc:112001. (265 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog b; Belongs to the SKP1 family.
    
 0.712
ENSOMEP00000005302
COMM domain containing 8.
   
  0.702
rnf7
Ring finger protein 7.
    
  0.701
commd1
Copper metabolism (Murr1) domain containing 1.
    
  0.689
ENSOMEP00000029448
NEDD8 ubiquitin like modifier.
    
  0.685
LOC112155766
NEDD8 ubiquitin like modifier.
    
  0.685
CUL5
Cullin 5; Belongs to the cullin family.
    
  0.675
LOC112142674
Cullin 5; Belongs to the cullin family.
    
  0.675
commd9
COMM domain containing 9.
    
  0.660
commd2
COMM domain containing 2.
    
  0.659
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.