ENSOMEP00000001015 protein (Oryzias melastigma)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSOMEP00000001015

Importin 13. (689 aa)

Predicted Functional Partners:

gart

0.973

ENSOMEP00000017299

0.918

LOC112146732

0.917

ube2i

0.917

ENSOMEP00000034743

0.911

LOC112150683

0.902

adgrd1

0.854

ran

0.854

kctd2

0.793

ENSOMEP00000005879

0.758

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000001015	ENSOMEP00000005879	ENSOMEP00000001015	ENSOMEP00000005879	Importin 13.	Uncharacterized protein.	0.758
ENSOMEP00000001015	ENSOMEP00000017299	ENSOMEP00000001015	ENSOMEP00000017299	Importin 13.	S1-like domain-containing protein.	0.918
ENSOMEP00000001015	ENSOMEP00000034743	ENSOMEP00000001015	ENSOMEP00000034743	Importin 13.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.911
ENSOMEP00000001015	LOC112146732	ENSOMEP00000001015	ENSOMEP00000003756	Importin 13.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.917
ENSOMEP00000001015	LOC112150683	ENSOMEP00000001015	ENSOMEP00000000689	Importin 13.	Mago homolog, exon junction complex subunit.	0.902
ENSOMEP00000001015	adgrd1	ENSOMEP00000001015	ENSOMEP00000014435	Importin 13.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.854
ENSOMEP00000001015	gart	ENSOMEP00000001015	ENSOMEP00000027208	Importin 13.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.973
ENSOMEP00000001015	kctd2	ENSOMEP00000001015	ENSOMEP00000002255	Importin 13.	Potassium channel tetramerization domain containing 2.	0.793
ENSOMEP00000001015	ran	ENSOMEP00000001015	ENSOMEP00000034237	Importin 13.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.854
ENSOMEP00000001015	ube2i	ENSOMEP00000001015	ENSOMEP00000031226	Importin 13.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.917
ENSOMEP00000005879	ENSOMEP00000001015	ENSOMEP00000005879	ENSOMEP00000001015	Uncharacterized protein.	Importin 13.	0.758
ENSOMEP00000005879	adgrd1	ENSOMEP00000005879	ENSOMEP00000014435	Uncharacterized protein.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.609
ENSOMEP00000005879	ran	ENSOMEP00000005879	ENSOMEP00000034237	Uncharacterized protein.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.609
ENSOMEP00000017299	ENSOMEP00000001015	ENSOMEP00000017299	ENSOMEP00000001015	S1-like domain-containing protein.	Importin 13.	0.918
ENSOMEP00000017299	adgrd1	ENSOMEP00000017299	ENSOMEP00000014435	S1-like domain-containing protein.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.731
ENSOMEP00000017299	ran	ENSOMEP00000017299	ENSOMEP00000034237	S1-like domain-containing protein.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.731
ENSOMEP00000034743	ENSOMEP00000001015	ENSOMEP00000034743	ENSOMEP00000001015	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Importin 13.	0.911
ENSOMEP00000034743	LOC112150683	ENSOMEP00000034743	ENSOMEP00000000689	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Mago homolog, exon junction complex subunit.	0.999
LOC112146732	ENSOMEP00000001015	ENSOMEP00000003756	ENSOMEP00000001015	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Importin 13.	0.917
LOC112146732	adgrd1	ENSOMEP00000003756	ENSOMEP00000014435	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.838