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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfkbil1Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1. (362 aa)    
Predicted Functional Partners:
ASF1B
Anti-silencing function 1Ba histone chaperone.
    
 
 0.771
asf1b
Anti-silencing function 1Ba histone chaperone.
    
 
 0.771
zranb2
Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family.
    
   0.535
LOC112157326
Zgc:158803.
    
   0.493
luc7l
LUC7-like (S. cerevisiae).
    
   0.493
YTHDC2
YTH domain containing 2.
   
   0.478
eaf1
ELL associated factor 1.
    
   0.463
LOC112137713
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
 
 0.413
dyrk4
Dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4.
   
  
 0.402
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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