Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000001050Uncharacterized protein. (903 aa)    
Predicted Functional Partners:
exo1
Exonuclease 1.
    
   0.883
LOC112136549
RAB5A, member RAS oncogene family, b.
    
 0.782
LOC112162956
RAB5A, member RAS oncogene family, a.
    
 0.782
rab5c
RAB5C, member RAS oncogene family.
    
 0.782
LOC112137972
RAB5B, member RAS oncogene family.
    
 0.782
crnkl1
Crooked neck pre-mRNA splicing factor 1.
      
 0.676
LOC112148531
Uncharacterized protein.
    
 0.674
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.674
LOC112149869
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.674
ENSOMEP00000001212
Microcephalin 1.
     
 0.651
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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