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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112163030TBC1 domain family, member 10Ab. (474 aa)    
Predicted Functional Partners:
LOC112146319
Si:dkey-16l2.16.
   
 0.765
ENSOMEP00000020458
RAB35, member RAS oncogene family b.
   
 0.765
ift27
Intraflagellar transport 27.
   
 0.702
ENSOMEP00000009897
ADP-ribosylation factor 6a.
   
 
 0.657
ENSOMEP00000035420
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
   
 
 0.657
arl15
ADP-ribosylation factor-like 15a.
   
 
 0.617
ENSOMEP00000025297
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
  0.432
ddx3x
DEAD-box helicase 3 X-linked a; Belongs to the DEAD box helicase family.
   
 
  0.432
ddx4
DEAD (Asp-Glu-Ala-Asp) box polypeptide 4; Belongs to the DEAD box helicase family.
   
 
  0.432
LOC112158349
Uncharacterized protein.
   
 
  0.432
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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