STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112150554Si:dkey-183n20.15. (209 aa)    
Predicted Functional Partners:
cmbl
Carboxymethylenebutenolidase homolog (Pseudomonas).
     
 0.711
ENSOMEP00000021629
RecQ helicase-like 4.
    
 
 0.532
blm
BLM RecQ like helicase.
    
 
 0.532
ENSOMEP00000033222
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
 
 0.497
LOC112148628
ER lipid raft associated 2.
    
 
 0.496
LOC112162023
ER lipid raft associated 1.
    
 
 0.496
rad52
RAD52 homolog, DNA repair protein.
    
 
 0.491
tpt1
Tumor protein, translationally-controlled 1; Belongs to the TCTP family.
      
 0.463
ube2j1
Ubiquitin-conjugating enzyme E2, J1.
    
 
 0.434
ENSOMEP00000009946
CARM1 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
   
 
  0.418
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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