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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000001100Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1962 aa)    
Predicted Functional Partners:
ush1c
Usher syndrome 1C.
   
 0.732
LOC112160030
Whirlin b.
    
 0.690
ENSOMEP00000031122
Whirlin a.
    
 0.690
LOC112146614
Usher syndrome 1Ga (autosomal recessive).
   
 0.684
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.684
LOC112154190
Usher syndrome 1Gb (autosomal recessive).
   
 0.684
LOC112163352
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
     
 0.632
LOC112151429
Uncharacterized protein.
    
 0.631
LOC112144837
Myosin, light chain 9b, regulatory.
    
 0.631
LOC112147542
Uncharacterized protein.
    
 0.631
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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