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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chrdl2Chordin-like 2. (445 aa)    
Predicted Functional Partners:
LOC112149994
Bone morphogenetic protein 16.
    
 0.675
bmp2
Bone morphogenetic protein 2b.
    
 0.675
bmp4
Bone morphogenetic protein 4.
    
 0.675
fam20c
Fam20C domain-containing protein.
    
  0.666
LOC112146491
FAM20C golgi associated secretory pathway kinase a.
    
  0.666
LOC112137105
Family with sequence similarity 20 member C, like.
    
  0.628
LOC112146151
Fam20C domain-containing protein.
    
  0.628
ENSOMEP00000010591
Uncharacterized protein.
   
  0.623
ENSOMEP00000021778
Uncharacterized protein.
   
  0.623
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.574
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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