ENSOMEP00000001119 protein (Oryzias melastigma)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSOMEP00000001119

Ring finger protein 111. (981 aa)

Predicted Functional Partners:

ENSOMEP00000002833

0.889

ENSOMEP00000020966

0.889

ENSOMEP00000035400

0.824

smad7

0.813

smad6

0.802

LOC112160358

0.802

ENSOMEP00000033039

0.766

LOC112156701

0.749

ube2n

0.749

ube2v2

0.746

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000001119	ENSOMEP00000002833	ENSOMEP00000001119	ENSOMEP00000002833	Ring finger protein 111.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.889
ENSOMEP00000001119	ENSOMEP00000020966	ENSOMEP00000001119	ENSOMEP00000020966	Ring finger protein 111.	Ribosomal protein S27a.	0.889
ENSOMEP00000001119	ENSOMEP00000033039	ENSOMEP00000001119	ENSOMEP00000033039	Ring finger protein 111.	Small ubiquitin-related modifier.	0.766
ENSOMEP00000001119	ENSOMEP00000035400	ENSOMEP00000001119	ENSOMEP00000035400	Ring finger protein 111.	Ubiquitin-like domain-containing protein.	0.824
ENSOMEP00000001119	LOC112156701	ENSOMEP00000001119	ENSOMEP00000009481	Ring finger protein 111.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.749
ENSOMEP00000001119	LOC112160358	ENSOMEP00000001119	ENSOMEP00000026880	Ring finger protein 111.	Mothers against decapentaplegic homolog.	0.802
ENSOMEP00000001119	smad6	ENSOMEP00000001119	ENSOMEP00000018339	Ring finger protein 111.	Mothers against decapentaplegic homolog.	0.802
ENSOMEP00000001119	smad7	ENSOMEP00000001119	ENSOMEP00000006795	Ring finger protein 111.	Mothers against decapentaplegic homolog.	0.813
ENSOMEP00000001119	ube2n	ENSOMEP00000001119	ENSOMEP00000028032	Ring finger protein 111.	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.749
ENSOMEP00000001119	ube2v2	ENSOMEP00000001119	ENSOMEP00000005581	Ring finger protein 111.	Ubiquitin-conjugating enzyme E2 variant 2.	0.746
ENSOMEP00000002833	ENSOMEP00000001119	ENSOMEP00000002833	ENSOMEP00000001119	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ring finger protein 111.	0.889
ENSOMEP00000002833	ENSOMEP00000020966	ENSOMEP00000002833	ENSOMEP00000020966	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.999
ENSOMEP00000002833	ENSOMEP00000033039	ENSOMEP00000002833	ENSOMEP00000033039	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Small ubiquitin-related modifier.	0.828
ENSOMEP00000002833	ENSOMEP00000035400	ENSOMEP00000002833	ENSOMEP00000035400	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-like domain-containing protein.	0.999
ENSOMEP00000002833	LOC112156701	ENSOMEP00000002833	ENSOMEP00000009481	Ubiquitin A-52 residue ribosomal protein fusion product 1.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.976
ENSOMEP00000002833	ube2n	ENSOMEP00000002833	ENSOMEP00000028032	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.976
ENSOMEP00000002833	ube2v2	ENSOMEP00000002833	ENSOMEP00000005581	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-conjugating enzyme E2 variant 2.	0.971
ENSOMEP00000020966	ENSOMEP00000001119	ENSOMEP00000020966	ENSOMEP00000001119	Ribosomal protein S27a.	Ring finger protein 111.	0.889
ENSOMEP00000020966	ENSOMEP00000002833	ENSOMEP00000020966	ENSOMEP00000002833	Ribosomal protein S27a.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSOMEP00000020966	ENSOMEP00000033039	ENSOMEP00000020966	ENSOMEP00000033039	Ribosomal protein S27a.	Small ubiquitin-related modifier.	0.759