STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabep1Rabaptin, RAB GTPase binding effector protein 1. (856 aa)    
Predicted Functional Partners:
LOC112148531
Uncharacterized protein.
   
 0.999
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
   
 0.999
LOC112149869
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.999
ENSOMEP00000012521
Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.
    
 0.967
LOC112157433
Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.
    
 0.967
gapvd1
GTPase activating protein and VPS9 domains 1.
   
 0.936
GGA1
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
    
 0.928
LOC112137546
Uncharacterized protein.
    
 0.928
LOC112137585
Uncharacterized protein.
    
 0.928
LOC112136549
RAB5A, member RAS oncogene family, b.
    
 0.922
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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