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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112163076Metalloendopeptidase. (963 aa)    
Predicted Functional Partners:
chrd
Chordin; Belongs to the chordin family.
   
 
 0.860
LOC112143001
Procollagen C-endopeptidase enhancer a.
   
0.716
ENSOMEP00000024402
Procollagen C-endopeptidase enhancer 2b.
   
0.716
tpcn2
Uncharacterized protein.
      
 0.597
LOC112138616
Zgc:136461; Belongs to the peptidase S1 family.
    
 0.576
ENSOMEP00000000406
Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
   
 
 0.540
LOC112143598
Uncharacterized protein.
   
 
  0.519
LOC112143599
Uncharacterized protein.
   
 
  0.519
prcp
Prolylcarboxypeptidase (angiotensinase C).
     
 0.499
ENSOMEP00000021460
Dipeptidyl-peptidase 7.
     
 0.499
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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